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Classified or top secret information was confidential material with restricted access. Information that was suppressed could be considered a cover-up.

A file titled Talos IV was classified as top secret, and only intended for reading by officers of Starfleet Command. (TOS: "The Menagerie, Part I")

In 2257, the personnel file of Captain Christopher Pike was classified. Pike was also briefed on the classified details surrounding the USS Discovery's previous captain, Gabriel Lorca. (DIS: "Brother")

In 2364, a holographic Paul Rice stated that the location of the USS Drake was classified. (TNG: "The Arsenal of Freedom")

In 2373, Captain Kathryn Janeway examined the Starfleet database for classified information on the Borg. (VOY: "Scorpion")

Starfleet Command classified all knowledge of Omega molecules as a military secret of the highest order and enacted the Omega Directive, on which only starship captains and flag officers were briefed. (VOY: "The Omega Directive")

When Kovich assisted Doctor Hugh Culber into his research for a cure for Philippa Georgiou's unique condition, he activated classified file Beta-4895-Omega, which contained information about Yor, a time soldier who was the only other individual known to have travelled through time, and across dimensions. (DIS: "Terra Firma, Part 1")

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